Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015912261.1_cds_XP_016462310.1_55551
CDS Infomation

[gene=LOC107785500] [db_xref=GeneID:107785500] [protein=protein ROOT PRIMORDIUM DEFECTIVE 1-like] [protein_id=XP_016462310.1] [location=36024..37361] [gbkey=CDS]
Sequence

ATGCTCAACCTTATTGGTAAACGGGGATGTTTTTCTGCTGAACTAAATACATCAATTGCA
TTCTTGTTCATAGATTCTTCAGCAATCTTGCAATTGCATCGATCAATGACCACCAGTAAA
AGAGTCCAAGACAGAAGCAAGAAGAAGCGGGTGCATGACCTTGAAATAGCCACAGAAAAG
CACAAGATCCTCTCTAAAGTCCTATTAATATTTGAAGTCCTCAAACAGGAGCCTCAAAAA
ATCATATCTATTAGGGAACTTGATCAATATAGGAGGCAAATAAACCTCCCGAAGCCCCAT
AAAATCTCAGCTTTTCTACGGAAGTCCCCAAAGCTCTTTGAACTGTACAAGGATCATAGA
GGGATTTTATGGTGTGGTATGACAAAGGAGGCTGAAGATTTAGTCCAAGAAGAGGAGGCT
ATTATTGAACAGCAGAGTGATAAAGCTGCAGAACTTGTAACTAGGATGCTGATGATGTCC
ATGGACAAGCGCCTTGCCTTAGATAAGATTGTTCATTTCAGAAGAGATTTGGGGTTGCCA
ATGGATTTTAGGAACCATTGGGTGCACAGATTTCCTGAGTACTTTAGAGTTGTTCATCCA
TTTAAACCTTATGATGAAAGTGAGTATTTAGAGCTTGTGAATTGGAGATCGAGTTGGGCT
ATGACAGAGTTAGAAAGGAAGGCGCTGGGTGGTATGCAGGCCCCAGATGATCACGTAGCT
GGTCTTCTTTCCTTGTCTTTCCCAATGAAATTCCCACCTGATTATAAACAAGTTTTGTCT
AGATATAAGGGGAAGATAGAGAATTTTCAGAAGCGGGAATACTTGTCGCCTTATGCAGAT
GCCAGGGAACTAAAGGCCGGAACACTGGAGTTCAATAAGAGGGCGGTTGCAGTGATGCAT
GAGCTGCTGAGCTTCACAATCGAAAAGAGGTTGGTGACAGATTATTTGACACATTTTAGG
AGGGAGTTCGTAATGCCTCAGAAGCTGATGAGGCTGTTGCTTAAACATTTTGGAATGTTT
TATGTTTCAGAAAGGGGTAAGAGATTTCATGTATTTCTTAATAGTGCTTATGAAGGTTCT
GAGTTGAGCGAGAAGCACCCTTTGACTGTTTGGAGGGAAAAGGTTCTAAGCTTTGTTGGA
TACAGGAGGAAGAAGGAAACAATGGATACTCTTAAAGATTTGCAGGAATTCGTGGATGAT
GATTTGCTTGAGAATGAGTCAGAAGATGAAAGAGTTCAAGTGGAAAATAACGAGCATAGT
ATGGGTAGTTTGGAGGGTGATTTGGAAGATGAATCCGAGATGGAGATTAATGAAGTTTAT
AGCGCATACAGGGAATGA

Peptide Sequence

PEP ID

XP_016462310.1
PEP Infomation

PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Nicotiana tabacum]
Sequence

MLNLIGKRGCFSAELNTSIAFLFIDSSAILQLHRSMTTSKRVQDRSKKKRVHDLEIATEK
HKILSKVLLIFEVLKQEPQKIISIRELDQYRRQINLPKPHKISAFLRKSPKLFELYKDHR
GILWCGMTKEAEDLVQEEEAIIEQQSDKAAELVTRMLMMSMDKRLALDKIVHFRRDLGLP
MDFRNHWVHRFPEYFRVVHPFKPYDESEYLELVNWRSSWAMTELERKALGGMQAPDDHVA
GLLSLSFPMKFPPDYKQVLSRYKGKIENFQKREYLSPYADARELKAGTLEFNKRAVAVMH
ELLSFTIEKRLVTDYLTHFRREFVMPQKLMRLLLKHFGMFYVSERGKRFHVFLNSAYEGS
ELSEKHPLTVWREKVLSFVGYRRKKETMDTLKDLQEFVDDDLLENESEDERVQVENNEHS
MGSLEGDLEDESEMEINEVYSAYRE

Transcript Sequence

Gene sequence data has not been registered.